지원사업
학술연구/단체지원/교육 등 연구자 활동을 지속하도록 DBpia가 지원하고 있어요.
커뮤니티
연구자들이 자신의 연구와 전문성을 널리 알리고, 새로운 협력의 기회를 만들 수 있는 네트워킹 공간이에요.
논문 기본 정보
- 자료유형
- 학술저널
- 저자정보
- 발행연도
- 2021.8
- 수록면
- 551 - 559 (9page)
- DOI
- 10.1007/s11816-021-00696-z
이용수
초록· 키워드
오류제보하기
Citrus unshiu Marc. cv. Miyagawa-wase is the most widely cultivated citrus variety in Korea. To determine whether the C. unshiu genome used in this study shows genetic variation compared to the published reference genome (C. unshiu Marc. Miyagawa-wase), we conducted genome re-sequencing of two C. unshiu cultivars (Miyagawa-1 and Miyagawa-2) cultivated on Jeju in Korea. Compared with the reference genome, 1,198,650 and 1,207,084 single-nucleotide polymorphisms (SNPs) and 172,259 and 172,391 insertion/deletion polymorphisms (InDels) were detected in the Miyagawa-1 and -2 genomes, respectively. In SNP and InDel classifications by genome annotation, 367,591 and 369,068 SNPs and 45,362 and 45,464 InDels were located in the genic regions of Miyagawa-1 and -2, respectively. Among the SNPs of Miyagawa-1 and -2, tran- sitions were more frequent than transversions. The majority of InDels was distributed in 1-bp InDels in both cultivars. The comparative number of total SNPs between Miyagawa-1 and -2 was smaller than the number of SNPs between the reference genome and Miyagawa-1 or -2. Gene ontology (GO) analysis showed that 23,164 and 23,049 genes with SNPs and 16,830 and 16,774 genes with InDels were annotated in the GO database. Taken together, Miyagawa-1 and -2 show genome-wide variation, including SNPs and InDels, compared to the published C. unshiu Marc. cv. Miyagawa-wase genome. This study suggests it would be more accurate to use the Miyagawa-1 and -2 genome sequences as a reference when conducting research using C. unshiu cultivated in Korea.
목차
등록된 정보가 없습니다.
참고문헌 (6)
참고문헌 신청
Ashburner M / 2000 / Gene ontology: tool for the unification of biology. The gene ontology consortium / Nat Genet 25(1):25~29
Ellstrand NC / 1987 / Patterns of genetic diversity in clonal plant species / Am J Bot 74(1):123~131
Ji-Eun Kim / 2014 / Genome-Wide SNP Calling Using Next Generation Sequencing Data in Tomato / Molecules and Cells 37(1):36~42
김석원 / 2015 / Monthly metabolic changes and PLS prediction of carotenoid content of citrus fruit by combined Fourier transform infrared spectroscopy and quantitative HPLC analysis / Plant Biotechnology Reports 9(4):247~258
Rahul Mahadev Shelake / 2019 / Evolution of plant mutagenesis tools: a shifting paradigm from random to targeted genome editing / Plant Biotechnology Reports 13(5):423~445
Ellstrand NC / 1987 / Patterns of genetic diversity in clonal plant species / Am J Bot 74(1):123~131
Ji-Eun Kim / 2014 / Genome-Wide SNP Calling Using Next Generation Sequencing Data in Tomato / Molecules and Cells 37(1):36~42
김석원 / 2015 / Monthly metabolic changes and PLS prediction of carotenoid content of citrus fruit by combined Fourier transform infrared spectroscopy and quantitative HPLC analysis / Plant Biotechnology Reports 9(4):247~258
Rahul Mahadev Shelake / 2019 / Evolution of plant mutagenesis tools: a shifting paradigm from random to targeted genome editing / Plant Biotechnology Reports 13(5):423~445
함께 읽어보면 좋을 논문
논문 유사도에 따라 DBpia 가 추천하는 논문입니다. 함께 보면 좋을 연관 논문을 확인해보세요!
-
성숙기 과다강우가 ‘궁천조생’ 온주밀감 과실품질에 미치는 영향
한국원예학회 학술발표요지
2017 .05
-
Seasonal Changes of Cold Acclimation Related Characteristics in ‘Miyagawa’ Satsuma Mandarin Leaves
한국원예학회 학술발표요지
2018 .10
-
Construction of High-density Linkage Map and QTL Analysis of Korean Watermelon using SNP and InDel Markers
한국원예학회 학술발표요지
2021 .10
-
Identification of functional SNPs in genes and their effects on plant phenotypes
Journal of Plant Biotechnology
2016 .01
-
맥주보리의 large-InDel 마커 개발을 위한 whole genome re-sequencing의 이용
한국육종학회지
2021 .09
-
Integrated Genetic Linkage Map of Interspecific Asian Pear Using SNP and InDel Markers Based on Next Generation Sequencing
한국원예학회 학술발표요지
2016 .10
-
Construction of High-Density Linkage Map of Korean Watermelon (Citrullus lanatus) using SNP and InDel Markers and QTL Analysis
한국원예학회 학술발표요지
2021 .05
-
유전자 단위 haplotype을 대변하는 토마토 Tag-SNP 선발 및 웹 데이터베이스 구축
Journal of Plant Biotechnology
2020 .01
-
Metabolomic analysis of Citrus unshiu cultivated under different cultivation conditions
한국식품영양과학회 학술대회발표집
2022 .10
-
An update of physical genomic information for commercial bovine SNP chip based on the ARS-UCD1.2 reference genome
Journal of Animal Breeding and Genomics
2021 .12
-
High-quality SNP calling from olive flounder, Paralichthys olivaceus, in Jeju Island, South Korea
한국수산과학회 양식분과 학술대회
2021 .04
-
Peel over pulp! Citrus unshiu peel seasoning “Gyulpi-Hanjum” with customized uses
한국식품영양과학회 학술대회발표집
2021 .10
-
InDel Marker Development to Distinguish Korean Peony Cultivars
한국약용작물학회 학술대회논문집
2023 .05
-
Development of InDel Markers to Distinguish among Codonopsis Species
한국약용작물학회 학술대회논문집
2023 .05
-
High Level of Sequence-Variation in Sacbrood Virus (SBV) from Apis mellifera
Journal of Apiculture
2017 .11
-
Development of InDel markers to identify Capsicum disease resistance using whole genome resequencing
Journal of Plant Biotechnology
2018 .01
-
Genetic Variability and Genome-wide Association Study in Pumpkins (Cucurbita moschata)
한국원예학회 학술발표요지
2021 .05
-
Development of InDel Markers for the Classification of Zizyphus jujuba. Mill Varieties
한국약용작물학회 학술대회논문집
2018 .05
-
Genome-wide SNP Identification in Two Hot Pepper Cultivars with Contrasting Bacterial Wilt Resistance Traits
한국원예학회 학술발표요지
2021 .05
-
Genotype Analysis of Ziziphus jujuba Mill. Cultivars using InDel Markers
한국약용작물학회 학술대회논문집
2023 .05
이 논문의 저자 정보
최근 본 자료
댓글(0)
0