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논문 기본 정보
- 자료유형
- 학술저널
- 저자정보
- 발행연도
- 2017.1
- 수록면
- 127 - 141 (15page)
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Rice (Oryza sativa L.) is thermophilic crop and all of its growth stages are affected by low temperature stress. However, some populations of common wild rice in Guangxi Province (China) (GXWR) can tolerate low temperature stress. To understand the molecular mechanisms underlying chilling tolerance in these wild rice resources, transcriptome sequencing was performed to study the differentially expressed genes (hereafter referred to as DEGs) between GXWR-derived chilling-tolerant chromosome segment substitution line (hereafter referred to as CSSL), DC90, and its chilling-sensitive recurrent parent 9311 under early chilling stress. Comparative transcriptomic analysis revealed 659 DEGs exclusively identified in DC90 in response to early chilling stress. Functional clustering by CARMO (comprehensive annotation platform for functional exploration of rice multiomics data) showed that majority of the DEGs were enriched in chloroplasts, suggesting a connection between chilling stress tolerance and photosynthesis regulation exists in rice. KEGG analysis of these DEGs presented a complicated chilling responsive regulatory network, including ‘phytohormone signaling’, ‘photosynthesis pathway’, ‘ribosome translation machinery’, ‘phenylpropanoid biosynthesis’, which is coordinately involved in early chilling response. Here, the identified DEGs and unveiled molecular regulatory network sheds light on deep understanding the mechanisms underlying rice chilling stress tolerance. As well, KEGG term-enriched DEGs, chilling tolerant QTLs (quantitative trait loci), and co-localized DEGs in introgression interval, will be focused for further functional investigation of the molecular mechanisms of chilling stress response in rice.
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참고문헌 (72)
참고문헌 신청
Abe F / 2002 / A single nucleotide polymorphism in the alternative oxidase gene among rice varieties differing in low temperature tolerance / FEBS Lett 527:181~185
Andaya VC / 2003 / QTLs conferring cold tolerance at the booting stage of rice using recombinant inbred lines from a japonica 9 indica cross / Theor Appl Genet 106:1084~1090
Andaya VC / 2003 / Mapping of QTLs associated with cold tolerance during the vegetative stage in rice / J Exp Bot 54:2579~2585
Anders S / 2010 / HTseq: analysing high throughput sequencing data with Python / Bioinformatics 31:166~169
Bae MS / 2003 / Analysis of the Arabidopsis nuclear proteome and its response to cold stress / Plant J 36:652~663
Andaya VC / 2003 / QTLs conferring cold tolerance at the booting stage of rice using recombinant inbred lines from a japonica 9 indica cross / Theor Appl Genet 106:1084~1090
Andaya VC / 2003 / Mapping of QTLs associated with cold tolerance during the vegetative stage in rice / J Exp Bot 54:2579~2585
Anders S / 2010 / HTseq: analysing high throughput sequencing data with Python / Bioinformatics 31:166~169
Bae MS / 2003 / Analysis of the Arabidopsis nuclear proteome and its response to cold stress / Plant J 36:652~663
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