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논문 기본 정보
- 자료유형
- 학술저널
- 저자정보
- 발행연도
- 2018.1
- 수록면
- 349 - 360 (12page)
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초록· 키워드
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Whole-genome sequencing of Flammulina ononidis, a wood-rotting basidiomycete, was performed to identify genes associated with carbohydrate-active enzymes (CAZymes). A total of 12,586 gene structures with an average length of 2009 bp were predicted by the AUGUSTUS tool from a total 35,524,258 bp length of de novo genome assembly (49.76% GC). Orthologous analysis with other fungal species revealed that 7051 groups contained at least one F. ononidis gene. In addition, 11,252 (89.5%) of 12,586 genes for F. ononidis proteins had orthologs among the Dikarya, and F. ononidis contained 8 species-specific genes, of which 5 genes were paralogous. CAZyme prediction revealed 524 CAZyme genes, including 228 for glycoside hydrolases, 21 for polysaccharide lyases, 87 for glycosyltransferases, 61 for carbohydrate esterases, 87 with auxiliary activities, and 40 for carbohydrate-binding modules in the F. ononidis genome. This genome information including CAZyme repertoire will be useful to understand lignocellulolytic machinery of this white rot fungus F. ononidis.
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등록된 정보가 없습니다.
참고문헌 (81)
참고문헌 신청
Arnolds E / 1977 / Einige Pilze eines Halbtrockenrasen bei Detmold(Westfalen) / Westf€al Pilzbriefe 11:29~39
Ripkov a S / 2008 / Flammulina ononidis – a new species for Slovakia / Czech Mycol 60:221~230
Łuszczy nski J / 2014 / Flammulina ononidis – first record in Poland / Acta Mycol 49:79~85
Ripkov a S / 2010 / The delimitation of Flammulina fennae / Mycol Progress 9:469~484
Hughes KW / 1999 / Patterns of geographic speciation in the genus Flammulina based on sequences of the ribosomal ITS1-5.8S-ITS2 area / Mycologia 91:978~986
Ripkov a S / 2008 / Flammulina ononidis – a new species for Slovakia / Czech Mycol 60:221~230
Łuszczy nski J / 2014 / Flammulina ononidis – first record in Poland / Acta Mycol 49:79~85
Ripkov a S / 2010 / The delimitation of Flammulina fennae / Mycol Progress 9:469~484
Hughes KW / 1999 / Patterns of geographic speciation in the genus Flammulina based on sequences of the ribosomal ITS1-5.8S-ITS2 area / Mycologia 91:978~986
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