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논문 기본 정보
- 자료유형
- 학술저널
- 저자정보
- 발행연도
- 2018.1
- 수록면
- 300 - 312 (13page)
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초록· 키워드
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Whole-genome sequencing of the wood-rotting fungus, Flammulina fennae, was carried out to identify carbohydrate- active enzymes (CAZymes). De novo genome assembly (31 kmer) of short reads by next-generation sequencing revealed a total genome length of 32,423,623 base pairs (39% GC). A total of 11,591 gene models in the assembled genome sequence of F. fennae were predicted by ab initio gene prediction using the AUGUSTUS tool. In a genome-wide comparison, 6,715 orthologous groups shared at least one gene with F. fennae and 10,667 (92%) of 11,591 genes for F. fennae proteins had orthologs among the Dikarya. Additionally, F. fennae contained 23 species-specific genes, of which 16 were paralogous. CAZyme identification and annotation revealed 513 CAZymes, including 82 auxiliary activities, 220 glycoside hydrolases, 85 glycosyltransferases, 20 polysaccharide lyases, 57 carbohydrate esterases, and 45 carbohydrate binding-modules in the F. fennae genome. The genome information of F. fennae increases the understanding of this basidiomycete fungus. CAZyme gene information will be useful for detailed studies of lignocellulosic biomass degradation for biotechnological and industrial applications.
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등록된 정보가 없습니다.
참고문헌 (75)
참고문헌 신청
Bas C / 1983 / Flammulina in western Europe / Persoonia-Molecular Phylogeny and Evolution of Fungi 12:51~66
Ripkova S / 2010 / The delimitation of Flammulina fennae / Mycol. Prog. 9:469~484
Perez-Butron JL / 2007 / Una nuevaespecie de Flammulina P. Karsten, F. cephalariae (Agaricales) encontradaen Espana / Rev. Catalana. Micol. 29:81~91
Eriksson K / 1990 / Microbial and enzymatic degradation of wood and wood components / Springer :1~87
Rytioja J / 2014 / Plant-polysaccharide-degrading enzymes from basidiomycetes / Microbiol. Mol. Biol. Rev. 78:614~649
Ripkova S / 2010 / The delimitation of Flammulina fennae / Mycol. Prog. 9:469~484
Perez-Butron JL / 2007 / Una nuevaespecie de Flammulina P. Karsten, F. cephalariae (Agaricales) encontradaen Espana / Rev. Catalana. Micol. 29:81~91
Eriksson K / 1990 / Microbial and enzymatic degradation of wood and wood components / Springer :1~87
Rytioja J / 2014 / Plant-polysaccharide-degrading enzymes from basidiomycetes / Microbiol. Mol. Biol. Rev. 78:614~649
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