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논문 기본 정보
- 자료유형
- 학술저널
- 저자정보
- 저널정보
- 한국미생물생명공학회 Journal of Microbiology and Biotechnology Journal of Microbiology and Biotechnology 제27권 제3호
- 발행연도
- 2017.1
- 수록면
- 591 - 597 (7page)
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초록· 키워드
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Maribacter dokdonensis DSW-8 was isolated from the seawater off Dokdo in Korea. To investigate the genomic features of this marine bacterium, we sequenced its genome and analyzed the genomic features. After de novo assembly and gene prediction, 16 contigs totaling 4,434,543 bp (35.95% G+C content) in size were generated and 3,835 protein-coding sequences, 36 transfer RNAs, and 6 ribosomal RNAs were detected. In the genome of DSW-8, genes encoding the proteins associated with gliding motility, molybdenum cofactor biosynthesis, and utilization of several kinds of carbohydrates were identified. To analyze the genomic relationships among Maribacter species, we compared publically available Maribacter genomes, including that of M. dokdonensis DSW-8. A phylogenomic tree based on 1,772 genes conserved among the eight Maribacter strains showed that Maribacter speices isolated from seawater are distinguishable from species originating from algal blooms. Comparison of the gene contents using COG and subsystem databases demonstrated that the relative abundance of genes involved in carbohydrate metabolism are higher in seawater-originating strains than those of algal blooms. These results indicate that the genomic information of Maribacter species reflects the characteristics of their habitats and provides useful information for carbon utilization of marine flavobacteria.
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참고문헌 (24)
참고문헌 신청
Aziz RK / 2008 / The RAST server: rapid annotations using subsystems technology / BMC Genomics 9 : 75 ~
Barbeyron T / 2008 / Description of Maribacter forsetii sp. nov., a marine Flavobacteriaceae isolated from North Sea water, and emended description of the genus Maribacter /
Boetzer M / 2011 / Scaffolding pre-assembled contigs using SSPACE / Bioinformatics 27 : 578 ~ 579
Cantarel BL / 2009 / The Carbohydrate-Active EnZymes database (CAZy): an expert resource for glycogenomics / Nucleic Acids Res 37 : D233 ~ D238
Edgar RC. / 2004 / MUSCLE: multiple sequence alignment with high accuracy and high throughput / Nucleic Acids Res 32 : 1792 ~ 1797
Barbeyron T / 2008 / Description of Maribacter forsetii sp. nov., a marine Flavobacteriaceae isolated from North Sea water, and emended description of the genus Maribacter /
Boetzer M / 2011 / Scaffolding pre-assembled contigs using SSPACE / Bioinformatics 27 : 578 ~ 579
Cantarel BL / 2009 / The Carbohydrate-Active EnZymes database (CAZy): an expert resource for glycogenomics / Nucleic Acids Res 37 : D233 ~ D238
Edgar RC. / 2004 / MUSCLE: multiple sequence alignment with high accuracy and high throughput / Nucleic Acids Res 32 : 1792 ~ 1797
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