To build environmentally friendly highways, we testes suitability for unique characteristics of pollution mitigation facility around the highways by evaluating optimal selections and implementation methodologies to minimize loan of non-point pollution substances into water-ways. To do this we categorized EIA target highways into three types ; big drainage basin, small drainage basin, and bridge section as to minimize non-point pollution of highway runoff. The terms of selected facility test based on the Natural and Manufactured Treatment Device were removal efficiency of TSS, BOD, COD, T-N, T-P, compatibility of site selection, economic feasibility, maintenance convenience, and the final mitigation facility.