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논문 기본 정보
- 자료유형
- 학술저널
- 저자정보
- 발행연도
- 2018.1
- 수록면
- 543 - 552 (10page)
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초록· 키워드
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In this study, the chloroplast genome of Hariotina reticulata was fully sequenced and compared to other Sphaeropleales chloroplast genomes. It is 210,757 bp larger than most Sphaeropleales cpDNAs. It presents a traditional chloroplast structure, and contains 103 genes, including 68 protein-coding genes, six rRNA genes and 29 tRNA genes. The coding region constitutes of 43% of the whole cpDNA. Eighteen introns are found in 11 genes and six introns are unique for Hariotina. 11 open reading frames are identified among these introns. The synteny between Hariotina and Acutodesmus cpDNAs is in general identical, while within Sphaeropleales order, high variability in cpDNA architecture is indicated by general high DCJ distances. Ankyra judayi exhibits the greatest dissimilarity in gene synteny to the others and share some unique gene clusters with Treubaria triappendiculata. The phylogenomic analyses show that A. judayi is clustered with Treubariaceae species and sister to Chlorophyceae incertae sedis and other Sphaeropleales species. The monophyly of Sphaeropleales is rejected.
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참고문헌 (34)
참고문헌 신청
Abe T / 2011 / tRNADB-CE 2011: tRNA gene database curated manually by experts / Nucleic Acids Res 39:210~213
An SS / 1999 / Phylogenetic relationships of Scenedesmus and Scenedesmus-like coccoid green algae as inferred from ITS-2 rDNA sequence comparisons / Plant Biol 1:418~429
Besendahl A / 2000 / The cyanobacterial origin and vertical transmission of the plastid $tRNA^{Leu}$ group-I intron / Curr Genet 37:12~23
Buchheim MA / 2012 / Phylogeny of Oedogoniales, Chaetophorales and Chaetopeltidales (Chlorophyceae): inferences from sequence-structure analysis of ITS2 / Ann Bot 109:109~116
Caisova L / 2013 / A consensus secondary structure of ITS2 in the Chlorophyta identified by phylogenetic reconstruction / Protist 164:482~496
An SS / 1999 / Phylogenetic relationships of Scenedesmus and Scenedesmus-like coccoid green algae as inferred from ITS-2 rDNA sequence comparisons / Plant Biol 1:418~429
Besendahl A / 2000 / The cyanobacterial origin and vertical transmission of the plastid
Buchheim MA / 2012 / Phylogeny of Oedogoniales, Chaetophorales and Chaetopeltidales (Chlorophyceae): inferences from sequence-structure analysis of ITS2 / Ann Bot 109:109~116
Caisova L / 2013 / A consensus secondary structure of ITS2 in the Chlorophyta identified by phylogenetic reconstruction / Protist 164:482~496
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