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논문 기본 정보
- 자료유형
- 학술저널
- 저자정보
- 발행연도
- 2016.1
- 수록면
- 359 - 365 (7page)
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In this study, the whole transcriptome of the Pacific oyster Crassostrea gigas was sequenced using Illumina RNA-seq. De novo assembly was performed with 33,750,764 raw reads using Trinity, which assembled 87,887 contigs. Transdecoder found 41,542 candidate coding contigs which showed homology to other species by BLAST analysis. Functional gene annotation was performed by Gene Ontology and KEGG pathway analyses. Finally, we identified a number of expressed gene pathways for C. gigas representing a useful model animal for gene information-based study such as environmental monitoring, immune-relevant aquaculture, and ecotoxicogenomics studies to uncover molecular mechanisms of stress-triggered sensitivity and physiological response to C. gigas.
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참고문헌 (33)
참고문헌 신청
Akira S / 2004 / Toll-like receptor signalling / Nat Rev Immunol 4:499~511
Alzieu C / 1984 / Ecotoxicological testing for the marine environment, vol 2 / State University :187~195
Bourlat SJ / 2013 / Genomics in marine monitoring: new opportunities for assessing marine health status / Mar Pollut Bull 74:19~31
Conesa A / 2005 / Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research / Bioinformatics 21:3674~3676
Curole JP / 2007 / Aquaculture genome technologies / Blackwell Publishing :525~543
Alzieu C / 1984 / Ecotoxicological testing for the marine environment, vol 2 / State University :187~195
Bourlat SJ / 2013 / Genomics in marine monitoring: new opportunities for assessing marine health status / Mar Pollut Bull 74:19~31
Conesa A / 2005 / Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research / Bioinformatics 21:3674~3676
Curole JP / 2007 / Aquaculture genome technologies / Blackwell Publishing :525~543
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