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논문 기본 정보
- 자료유형
- 학술저널
- 저자정보
- 발행연도
- 2019.1
- 수록면
- 183 - 191 (9page)
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The purplish Washington clam (Saxidomus purpuratus) in the family Veneridae is distributed widely along the intertidal zones of northeast Asia and is increasingly being utilized as a commercially important food resource. Bivalves maintain homeostasis by regulating their food intake and digestion, innate immunity, and biotransformation in a mollusk-specific organ, the digestive gland. To understand digestive gland-specific pathways, we generated a high-quality de novo assembly of the digestive gland transcriptome of this clam using the Illumina Miseq platform. A total of 9.9 million raw reads were obtained and assembled using the Oases assembly platform, resulting in 27,358 contigs with an N50 of 433 bp. Functional gene annotations were performed using Gene Ontology, Eukaryotic Orthologous Groups, and Kyoto Encyclopedia of Genes and Genomes pathway analyses. In the transcriptome, many crucial genes involved in innate immunity and digestion metabolism were detected. A number of enzymes associated with drug metabolism were annotated, as much as that identified from the whole transcriptome of the Pacific oyster Crassostrea gigas. We provide valuable sequence information of S. purpuratus to predict functional understandings of the bivalve-specific digestive gland. This resource will be valuable for researchers comparing gene compositions and their expression levels in the digestive glands of bivalves.
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참고문헌 (30)
참고문헌 신청
Bao X / 2016 / The complete mitochondrial genome of Saxidomus purpuratus(Veneroida : Veneridae) / Mitochondrial DNA A 27:3648~3649
Barkalova VO / 2016 / Morphology of the anterior digestive system of tonnoideans(Gastropoda : Caenogastropoda)with an emphasis on the foregut glands / Molluscan Res 36:54~73
Bolger AM / 2014 / Trimmomatic : a flexible trimmer for Illumina sequence data / Bioinformatics 30:2114~2120
Cajaraville MP / 1990 / Responses of the basophilic cells of the digestive gland of mussels to petroleum hydrocarbon exposure / Dis Aquat Org 9:221~228
Canesi L / 2012 / Bivalve molluscs as a unique target group for nanoparticle toxicity / Mar Environ Res 76:16~21
Barkalova VO / 2016 / Morphology of the anterior digestive system of tonnoideans(Gastropoda : Caenogastropoda)with an emphasis on the foregut glands / Molluscan Res 36:54~73
Bolger AM / 2014 / Trimmomatic : a flexible trimmer for Illumina sequence data / Bioinformatics 30:2114~2120
Cajaraville MP / 1990 / Responses of the basophilic cells of the digestive gland of mussels to petroleum hydrocarbon exposure / Dis Aquat Org 9:221~228
Canesi L / 2012 / Bivalve molluscs as a unique target group for nanoparticle toxicity / Mar Environ Res 76:16~21
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