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학술연구/단체지원/교육 등 연구자 활동을 지속하도록 DBpia가 지원하고 있어요.
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연구자들이 자신의 연구와 전문성을 널리 알리고, 새로운 협력의 기회를 만들 수 있는 네트워킹 공간이에요.
논문 기본 정보
- 자료유형
- 학술저널
- 저자정보
- 발행연도
- 2019.1
- 수록면
- 515 - 528 (14page)
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Background Molting is a critical developmental process for crustaceans, during which the claw muscles undergo periodic atrophy and restoration. But the mechanism underlying this special muscle reshuffle around ecdysis is not yet thoroughly understood. Objective To investigate the molecular mechanism underlying the muscle’s reshuffle over the molting cycle of Chinese mitten crab Eriocheir sinensis. Methods The Illumina high-throughput sequencing technique were used to sequence the transcriptome of the whole claw muscles from Chinese mitten crab Eriocheir sinensis in three molting stages (inter-molt C stage, pre-molt D3− 4 and post-molt A–B stage); the de novo assembly, annotation and functional evaluation of the contigs were performed with bioinformatics tools. Results Totally 129,149 unigenes, 128,190 CDS, 33,770 SSRs and a large number of SNP sites were obtained, and 3700 and 12,771 differentially expressed genes (DEGs) were identified respectively in A–B and D3− 4 stage compared with that in C stage. The identified DEGs were enriched to 746 and 1 408 GO terms respectively in A–B and D3– 4 stage compared with C stage (p ≤ 0.05). KEGG pathway analysis showed that the DEGs were significantly enriched in 14 and 11 pathways in A–B vs C comparison and D3− 4 vs C comparison (p ≤ 0.05), respectively. These DEGs are involved in several biological processes critical for the animal’s growth and development, such as gene expression, protein synthesis, muscle development, new cuticle reconstruction, oxidation–reduction process and glycolytic process. Conclusion The data generated in this study is the first transcriptomic resource from the muscles of Chinese mitten crab, which would facilitate to characterize key molecular processes underlying crab muscle’s growth and development during the molting cycles.
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참고문헌 (51)
참고문헌 신청
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Colbourne JK / 2011 / The ecoresponsive genome of Daphnia pulex / Science 331:555~561
Das S / 2016 / Transcriptome analysis of the molting gland(Y-organ)from the blackback land crab, Gecarcinus lateralis / Comp Biochem Physiol Part D Genom Proteom 17:26~40
de Hoon MJ / 2004 / Open source clustering software / Bioinformatics 20:1453~1454
Benjamini Y / 2001 / The control of the false discovery rate in multiple testing under dependency / Ann Stat 29:1165~1188
Colbourne JK / 2011 / The ecoresponsive genome of Daphnia pulex / Science 331:555~561
Das S / 2016 / Transcriptome analysis of the molting gland(Y-organ)from the blackback land crab, Gecarcinus lateralis / Comp Biochem Physiol Part D Genom Proteom 17:26~40
de Hoon MJ / 2004 / Open source clustering software / Bioinformatics 20:1453~1454
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