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논문 기본 정보

자료유형
학위논문
저자정보

이용성 (전남대학교, 전남대학교 대학원)

지도교수
김길용
발행연도
2014
저작권
전남대학교 논문은 저작권에 의해 보호받습니다.

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이 논문의 연구 히스토리 (2)

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Significant medium components for chitinase and gelatinase production by L. capsici YS1215 was optimized by statistical methods. Fractional factorial screening technique and central composite design were used to optimize the medium composition for the production of chitinase and gelatinase from L. capsici YS1215. The optimum conditions identi?ed were nutrient broth of 2.0 g/l, crab shell powder of 2.0 g/l and gelatin of 1.0 g/l. The statistical experimental approach was found effective in optimizing the medium components with 3.76, and 1.1 fold of the prior chitinase and gelatinase production, respectively. Crude enzymes obtained by precipitation with 80% ammonium sulfate were found in inhibition of pathogenic fungal mycelia against Colletotrichum gleosporioides, Phytophthora capsici, and Rhizoctonia solani.
The root-knot nematodes, Meloidogyne spp., are important pathogens causing serious diseases in various plants in agriculture. The bacterial strain, Lysobacter capsici YS1215, was isolated from the soil. In the present study, we investigated control of the root-knot nematode by the strain YS1215 in in vitro condition. One of the potential mechanisms against the Meloidogyne spp. may be the chitinolytic activity against the nematodes’ eggs. The chitinase secreted by L. capsici YS1215 was purified by protein precipitation with 80% ammonium sulfate, DEAE-Cellulose and Sephadex G-100. By chitinase active staining of the chitinase, a single band was obtained with an estimated molecular weight of 43.6 kDa. The optimal pH and temperature of the chitinase were 6.0 and 40oC, respectively. The chitinase degraded chitin layer of the shells of the nematodes’ eggs and reduced the egg hatch significantly. The activity of chitinase secreted by L. capsici YS1215 was not affected by ZnCl2, MnCl2, MgCl2, CuSO4 and CaCl2. The chitinase activity was enhanced by EDTA, while it was strongly inhibited by HgCl2 and AgNO3. The purified enzyme could also hydrolyze swollen chitin, glycol chitin, glycol chitosan, and chitin powder.
The effect of different concentrations of bacterial culture filtrate (BCF) of L. capsici YS1215 on the mortality of second-stage juveniles (J2) of Meloidogyne incognita was studied using 24-well plates. J2 mortality increased with increasing concentrations of BCF. To investigate role of gelatinases in the culture filtrate, the partial purification and characterization of gelatinolytic proteins was done. The partially purified proteins showed three clear bands with molecular weights estimated using zymography to be 255.7, 232.1, and 146.4 kDa. The optimal pH and temperature for the proteins were 8.0 and 40oC, respectively. EDTA, FeCl3, and 1, 10-phenanthroline inhibited the activity of the proteins, while it was activated by MnCl2. Moreover, the proteins could hydrolyze skimmed milk, collagen, gelatin, and bovine serum albumin as substrates, but not casein. The proteins could induce 75% J2 mortality in 5 days and degrade J2 bodies.
Lactic acid was isolated from culture filtrate of the YS1215, and its ovicidal activity was investigated. Purification and identification of lactic acid was performed by series of column chromatographies and identified by 1H and 13C-NMR spectrum and GC-MS analysis. Our results showed that bacterial culture filtrate containing lactic acid significantly inhibited egg hatch. The lowest egg hatch rate (5.9%) was found in high concentration (1,250 mM) of lactic acid at 5 days after incubation, followed by 1,000 (15.2%), 750 (23.7%), 500 (29.8%) and 250 (36.4%) mM while egg hatch in control (sterile distilled water) was 44.5%. Additionally, crude compounds extracted from bacterial culture filtrate with ethyl acetate also showed significant suppression of egg hatch.
Chitinase and gelatinase activities were induced by nematode eggs and juveniles supplemented in medium as substrates, and confirmed by SDS-PAGE showing active bands in chitinase active staining and gelatin zymography, respectively. The results of this study clearly indicated that applications of bacterial culture and crab shell powder significantly increased the chitinase and gelatinase activities as well as population of chitinolytic and gelatinolytic bacteria in the rhizosphere. Furthermore, bacterial culture of L. capsici YS1215 applied for tomato plants also promoted growths on shoot length due to decrease in the severity of diseases caused by the root-knot nematodes in comparison with control (fertilizer treatment). Hence, the results clearly demonstrated that L. capsici YS1215 and its lytic enzymes played important roles in suppression of M. incognita infection.

목차

Abstract 1
Chater 1 4
General introduction 4
1. Root-knot nematodes 4
2. Life cycle of root-knot nematodes 5
3. Symptoms by root-knot nematode infection 7
4. Management of root-knot nematodes 9
4.1. Cropping systems 10
4.2. Physical methods 10
4.2.1 Steam heat 11
4.2.2 Solarization 11
4.3. Chemical control 12
4.4. Biological control 13
4.4.1. Fungi 14
4.4.2. Bacteria 15
5. The genus Lysobacter 17
6. Objectives of research 18
Chapter 2 19
2.1. Introduction 20
2.2. Materials and Methods 22
2.2.1. Preparation of media composition and bacterial culture 22
2.2.2. Assay of antifungal activity 23
2.2.3. Lytic enzyme assays 24
2.2.4. Statistical design of experiments 25
2.3. Results and Discussion 26
2.3.1. Fractional factorial screening design (FFSD) 26
2.3.2. Optimization of screened medium components 27
Chapter 3 36
3.1. Introduction 37
3.2. Materials and Methods 38
3.2.1 Microorganisms and nematode egg preparation 38
3.2.2 Chitinase activity assay 39
3.2.3 Isolation and purification of chitinase produced by L. capsici YS1215 40
3.2.4. Electrophoresis and chitinase active staining 41
3.2.5. Effects of pH and temperature on chitinase activity stability 41
3.2.6. Effects of different salt solutions and ethylenediamine tetraacetic acid (EDTA) on chitinase activity 42
3.2.7. Substrate specificity of the chitinase 43
3.2.8. Degradation of the chitin present in nematodes’ egg shells 43
3.2.9. Egg hatch inhibition by the chitinase and Statistical analysis 44
3.3. Results 44
3.3.1. Isolation and screening of chitinolytic strains 44
3.3.2. Purification of the chitinase 45
3.3.3. Effect of pH and temperature on chitinase activity 47
3.3.4. Effects of salts and substrates on chitinase activity 48
3.3.5. Effect of purified chitinase on egg hatch of nematodes 50
3.4. Discussion 51
Chapter 4 55
4.1. Introduction 56
4.2. Materials and Methods 58
4.2.1. In vitro nematicidal assays 58
4.2.2. Gelatinase activity and gelatin zymography assays 59
4.2.3. Purification and characterization of gelatinolytic proteins 60
4.2.4. J2 mortality caused by the gelatinolytic proteins 61
4.2.5. Scanning electron microscopy (SEM) 62
4.2.6. Effects of pH and temperature on gelatinase activity and the enzyme stability 62
4.2.7. Effect of different salt solutions and inhibitors on gelatinase activity of the gelatinolytic proteins 63
4.2.8. Statistical analysis 63
4.3. Results 63
4.3.1. Effect of BCF on J2 mortality of nematode 63
4.3.2. Characterization and purification of gelatinolytic proteins 64
4.3.3. Effect of pH, temperature, and cations on gelatinase activity 67
4.3.4. Effect of gelatinolytic proteins on juvenile mortality of nematodes 70
4.4. Discussion 73
Chapter 5 76
5.1. Introduction 76
5.2. Materials and Methods 79
5.2.1. Preparation of nematode eggs 79
5.2.2. Preparation of bacterial culture filtrate 79
5.2.3. Effect of BCF on nematodes’ egg hatch 80
5.2.4. Effects of ethyl acetate extract on egg hatch 80
5.2.5. Purification and identification of lactic acid 81
5.2.6. Structure identification of the purified compound produced by strain YS1215 82
5.2.7. Effects of lactic acid on egg hatch 82
5.2.8. Statistical analysis 83
5.3. Results 83
5.3.1. Effect of BCF on nematodes’ egg hatch 83
5.3.2. Effect of ethyl acetate extract on egg hatch 84
5.3.3. Structure identification of the purified compound produced by strain YS1215 85
5.3.4. Effect of lactic acid on egg hatch 87
5.4. Discussion 88
Chapter 6 91
6.1. Introduction 92
6.2. Materials and Methods 94
6.2.1. Bacterial culture 94
6.2.2. Nematode inoculum 94
6.2.4. Chitinase active staining and zymography 95
6.2.5. Tomato pot trials 96
6.2.6. Lytic enzyme activity assay in soil 97
6.2.7. Bacterial population in soil 98
6.2.8. Statistical analysis 99
6.3. Results 99
6.3.1. Induction of chitinase activities by crab shell powder and nematode eggs 99
6.3.2. Induction of gelatinase activities by gelatin and juveniles 101
6.3.3. Biocontrol of root-knot nematode in tomato 103
6.4. Discussion 105
Chapter 7 108
General conclusions 108
References 110
Abstract in Korean 139
Publications 142

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