지원사업
학술연구/단체지원/교육 등 연구자 활동을 지속하도록 DBpia가 지원하고 있어요.
커뮤니티
연구자들이 자신의 연구와 전문성을 널리 알리고, 새로운 협력의 기회를 만들 수 있는 네트워킹 공간이에요.
초록· 키워드
오류제보하기
Complete chloroplast genome sequences provide detailed information about any structural changes of the genome, instances of phylogenetic reconstruction, and molecular markers for fine-scale analyses. Recent developments of next-generation sequencing (NGS) tools have led to the rapid accumulation of genomic data, especially data pertaining to chloroplasts. Short reads deposited in public databases such as the Sequence Read Archive of the NCBI are open resources, and the corresponding chloroplast genomes are yet to be completed. The V. dilatatum complex in Korea consists of four morphologically similar species: V. dilatatum, V. erosum, V. japonicum, and V. wrightii. Previous molecular phylogenetic analyses based on several DNA regions did not resolve the relationship at the species level. In order to examine the level of variation of the chloroplast genome in the V. dilatatum complex, raw reads of V. dilatatum deposited in the NCBI database were used to reconstruct the whole chloroplast genome, with these results compared to the genomes of V. erosum, V. japonicum, and three other species in Viburnum. These comparative genomics results found no significant structural changes in Viburnum. The degree of interspecific variation among the species in the V. dilatatum complex is very low, suggesting that the species of the complex may have been differentiated recently. The species of the V. dilatatum complex share large unique deletions, providing evidence of close relationships among the species. A phylogenetic analysis of the entire genome of the Viburnum showed that V. dilatatum is a sister to one of two accessions of V. erosum, making V. erosum paraphyletic. Given that the overall degree of variation among the species in the V. dilatatum complex is low, the chloroplast genome may not provide a phylogenetic signal pertaining to relationships among the species.
목차
ABSTRACT
Materials and Methods
Results and Discussion
Literature Cited
참고문헌 (0)
참고문헌 신청함께 읽어보면 좋을 논문
논문 유사도에 따라 DBpia 가 추천하는 논문입니다. 함께 보면 좋을 연관 논문을 확인해보세요!
-
Phylogenetic analysis of Viburnum (Adoxaceae) in Korea using DNA sequences
식물분류학회지
2018 .09
-
The complete chloroplast genome of Glycyrrhiza uralensis Fisch. isolated in Korea (Fabaceae)
식물분류학회지
2021 .12
-
Next-generation sequencing based Cyperus niveus (Cyperaceae) complete chloroplast genome: A comparative analysis and phylogeny
식물분류학회지
2024 .06
-
Characterization and comparative analysis of the complete organelle genomes of three red macroalgae species (Neoporphyra dentata, Neoporphyra seriata, and Neopyropia yezoensis) and development of molecular makers for their identification
Genes & Genomics
2024 .03
-
In silico comparative analysis of the complete chloroplast genome sequences in the mulberry family (Moraceae)
식물분류학회지
2024 .06
-
The complete chloroplast genome of Zoysia macrostachya (Poaceae): Insights into intraspecific variations and species delimitation of the Zoysia species
식물분류학회지
2021 .09
-
Complete Chloroplast Genome of Bienertia sinuspersici and Chloroplast Genome Evolution in Famaily Amaranthaceae
한국분석과학회 학술대회
2015 .11
-
RNA-mediated regulation of chromatin structures
Genes & Genomics
2020 .01
-
A comparative morphological study of Viburnum (Adoxaceae) in Korea
식물분류학회지
2019 .06
-
The complete chloroplast genome of Aruncus aethusifolius (Rosaceae), a species endemic to Korea
식물분류학회지
2022 .06
-
The complete chloroplast genome of Campsis grandiflora (Bignoniaceae)
식물분류학회지
2022 .09
-
Complete chloroplast genome of Syzygium glomeratum (Myrtaceae) and phylogenetic analysis
식물분류학회지
2024 .12
-
Dynamic evolution of Panax species
Genes & Genomics
2021 .01
-
The complete chloroplast genome of Erigeron canadensis isolated in Korea (Asteraceae): Insight into the genetic diversity of the invasive species
식물분류학회지
2023 .03
-
The complete chloroplast genome of Polygonatum falcatum (Asparagaceae)
식물분류학회지
2022 .03
-
Complete chloroplast genome sequence of Clematis calcicola (Ranunculaceae), a species endemic to Korea
식물분류학회지
2022 .12
-
Characterization of chloroplast genomes of Alnus rubra and Betula cordifolia, and their use in phylogenetic analyses in Betulaceae
Genes & Genomics
2019 .01
-
Comparative Genomics Reveals the Core and Accessory Genomes of Streptomyces Species
Journal of Microbiology and Biotechnology
2015 .01
-
Phylogenetic position of Daphne genkwa (Thymelaeaceae) inferred from complete chloroplast data
식물분류학회지
2021 .06
-
The complete chloroplast genome of Diarthron linifolium (Thymelaeaceae), a species found on a limestone outcrop in eastern Asia
식물분류학회지
2021 .12
이 논문의 저자 정보
최근 본 자료
댓글(0)
0