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논문 기본 정보
- 자료유형
- 학술저널
- 저자정보
- 발행연도
- 2020.1
- 수록면
- 1,011 - 1,021 (11page)
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Background Euphorbia jolkini, a medicinal herb that grows on the warm beaches in Japan and South Korea, is known to be used for traditional medicines to treat a variety of ailments, including bruises, stifness, indigestion, toothache, and diabetes. Objective It is to analyze the whole transcriptome and identify the genes related to the phenylpropanoid biosynthesis in the medicinally important herb E jolkini. Methods Paired-end Illumina HiSeq™ 2500 sequencing technology was employed for cDNA library construction and Illumina sequencing. Public databases like TAIR (The Arabidopsis Information Resource), Swissprot and KEGG (Kyoto Encyclopedia of Genes and Genomes) were used for annotations of unigenes obtained. Results The transcriptome of E. jolkini generated 139,215 assembled transcripts with an average length of 868 bp and an N50 value of 1460 bp that were further clustered using CD-HIT into 93,801 unigenes with an average length of 847 bp (N50- 1410 bp). Sixty-three percent of the coding sequences (CDS) were annotated from the longest open reading frame (ORF). A remarkable percentage of unigenes were annotated against various databases. The diferentially expressed gene analysis revealed that the expression of genes related to the terpenoid backbone biosynthesis pathway was higher in the fowers, whereas that of genes related to the phenylpropanoid biosynthesis pathway was both up- and downregulated in fowers and leaves. A search of against the transcription factor domain found 1023 transcription factors (TFs) that were from 54 TF families. Conclusion Assembled sequences of the E. jolkini transcriptome are made available for the frst time in this study E. jolkini and lay a foundation for the investigation of secondary metabolite biosynthesis.
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참고문헌 (52)
참고문헌 신청
Altermann E / 2005 / PathwayVoyager : pathway mapping using the Kyoto Encyclopedia of Genes and Genomes(KEGG)database / BMC Genomics 6:60
Ambawat S / 2013 / MYB transcription factor genes as regulators for plant responses : an overview / Physiol Mol Biol Plants 19:307~321
Annadurai RS / 2013 / De Novo transcriptome assembly(NGS)of Curcuma longa L. rhizome reveals novel transcripts related to anticancer and antimalarial terpenoids / PLoS ONE 8:e56217
Bergman ME / 2019 / Medically useful plant terpenoids: biosynthesis, occurrence, and mechanism of action / Molecules 24
Bhuiyan NH / 2009 / Gene expression profiling and silencing reveal that monolignol biosynthesis plays a critical role in penetration defence in wheat against powdery mildew invasion / J Exp Bot 60:509~521
Ambawat S / 2013 / MYB transcription factor genes as regulators for plant responses : an overview / Physiol Mol Biol Plants 19:307~321
Annadurai RS / 2013 / De Novo transcriptome assembly(NGS)of Curcuma longa L. rhizome reveals novel transcripts related to anticancer and antimalarial terpenoids / PLoS ONE 8:e56217
Bergman ME / 2019 / Medically useful plant terpenoids: biosynthesis, occurrence, and mechanism of action / Molecules 24
Bhuiyan NH / 2009 / Gene expression profiling and silencing reveal that monolignol biosynthesis plays a critical role in penetration defence in wheat against powdery mildew invasion / J Exp Bot 60:509~521
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