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Pichia pastoris is one of the most widely used expression systems for the secretory expressionof recombinant proteins. The secretory expression in P. pastoris usually makes use of the preproMATα sequence from Saccharomyces cerevisiae, which has a dibasic amino acid cleavagesite at the end of the signal sequence. This is efficiently processed by Kex2 protease, resultingin the secretion of high levels of proteins to the medium. However, the proteins that arehaving the internal accessible dibasic amino acids such as KR and RR in the coding regioncannot be expressed using this signal sequence, as the protein will be fragmented. We haveidentified a new signal sequence of 18 amino acids from a P. pastoris protein that can secreteproteins to the medium efficiently. The PMT1-gene-inactivated P. pastoris strain secretes a ~30kDa protein into the extracellular medium. We have identified this protein by determining itsN-terminal amino acid sequence. The protein secreted has four DDDK concatameric internalrepeats. This protein was not secreted in the wild-type P. pastoris under normal cultureconditions. We show that the 18-amino-acid signal peptide at the N-terminal of this protein isuseful for secretion of heterologous proteins in Pichia.

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