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논문 기본 정보
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- 한국미생물생명공학회 Journal of Microbiology and Biotechnology Journal of Microbiology and Biotechnology 제16권 제4호
- 발행연도
- 2006.1
- 수록면
- 543 - 549 (7page)
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DNA microarray was used to study the transcrip-tion profiling of Escherichia coli adapting to acetate as a solecarbon source. Bacteria grown in glucose minimal media3,497 genes were monitored at seven time points during thisadaptation. Among the central metabolic genes, the glycolyticand glucose phosphotransferase genes were represed as thebacteria entered stationary phase, whereas the glyoxylatepathway, TCA cycle, and gluconeogenic genes were induced.Distinct induction or represion patterns were recognizedamong different pathway genes. For example, the repressionof glycolytic genes and the induction of gluconeogenic onesstarted imediately after glucose was depleted. On the otherand glyoxylate genes gradually responded to the glucosedepletion or was more related to growth in acetate. Whenthe whole genome was considered, many of the CRP,FadR, and Cra regulons were immediately responsive to theglucose depletion, whereas the σs, Lrp, and IHF regulonswere gradualy responsive to the glucose depletion. Theexpression profiling also provided differential regulations betweenisoenzymes; for example, malic enzymes A (sfcA) and B(maeB). The expression profiles of three genes were confirmedwith RT-PCR.
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참고문헌 (22)
참고문헌 신청
Arfin, S. M / 2000 / Global gene expression profiling in Escherichia coli K12. The effects of integration host factor / J. Biol. Chem. 275
Balazsi, G / 2005 / Topological units of environmental signal processing in the transcriptional regulatory network of Escherichia coli. / Proc. Natl. Acad. Sci. USA 102 : 784
Cakir, T / 2004 / Metabolic pathway analysis of yeast strengthens the bridge between transcriptomics and metabolic networks. / Biotechnol. Bioeng. 86 : 251 ~ 260
Cozzone, A. J / 1998 / Regulation of acetate metabolism by protein phosphorylation in enteric bacteria / Annu. Rev. Microbiol. 52 : 127 ~ 164
DeRisi, J. L / 1997 / Exploring the metabolic and genetic control of gene expression on a genomic scale / Science 278 : 680 ~ 686
Balazsi, G / 2005 / Topological units of environmental signal processing in the transcriptional regulatory network of Escherichia coli. / Proc. Natl. Acad. Sci. USA 102 : 784
Cakir, T / 2004 / Metabolic pathway analysis of yeast strengthens the bridge between transcriptomics and metabolic networks. / Biotechnol. Bioeng. 86 : 251 ~ 260
Cozzone, A. J / 1998 / Regulation of acetate metabolism by protein phosphorylation in enteric bacteria / Annu. Rev. Microbiol. 52 : 127 ~ 164
DeRisi, J. L / 1997 / Exploring the metabolic and genetic control of gene expression on a genomic scale / Science 278 : 680 ~ 686
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